smtools: The Redding Lab analysis package

This is a package written for the analysis of single molecule data by the Redding Lab, at the University of Cailfornia, San Francisco.

PACKAGE CONTENTS:

Dependencies

  • numpy
  • scipy
  • scikit-image
  • matplotlib

Installation

The easiest way to install the package is via pip:

$ pip install smtools

Alternatively, the version under development can be installed by:

$ pip install git+https://github.com/ReddingLab/smtools

Documentation

Documentation: https://smtools.readthedocs.io/en/latest/

Version History

0.3.0

  • Addition of the Curtain class.
  • Addition of the stacks module
  • Major changes to point_fitting.fit_routine. Now does error filtering. Now accepts and returns lists of (x,y) tuples rather than single tuples.
  • Reorganization of the documentation.

0.2.0

  • Addition of curtains and misc modules

0.1.0

  • Initial release with alignment, point_fitting modules